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| = Allen Brain Atlas data = In the following you can find FreeSurfer recons constructed with v5.3 and soon also v6 of six (H0351.1009 ,H0351.1012 ,H0351.1015 ,H0351.1016 ,H0351.2001 ,H0351.2002) ex-vivo scans that are part of the human Allen brain atlas. The data can be found and is described [[http://human.brain-map.org/mri_viewers/data|here]]. Note there are two more subjects available in the human Allen brain atlas, but they consist only of a single hemisphere and were hence excluded. |
= THIS PAGE HAS BEEN MOVED TO SHAREPOINT! = Please refer to this site/make edits here for the most updated information: https://partnershealthcare.sharepoint.com/sites/LCN/SitePages/Allen-Brain-Atlas---human-data.aspx ---- <<BR>> <<BR>> <<BR>> |
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| The recons were manually edited by [[https://nru.dk/index.php/staff-list/phd-students/70-vincent-beliveau|Vincent Beliveau]] and [[https://nru.dk/index.php/staff-list/post-docs/62-melanie-ganz-benjaminsen|Melanie Ganz]] in order to get good surface reconstructions. Note that there were no subcortical segmentation edits performed! | |
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| '''FreeSurfer v5.3 recons:''' | |
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| H0351.1009 H0351.1012 H0351.1015 H0351.1016 H0351.2001 H0351.2002 | = Allen Brain Atlas - human data = In the following you can find FreeSurfer recons constructed with v5.3 and soon also v6 of six (H0351.1009 ,H0351.1012 ,H0351.1015 ,H0351.1016 ,H0351.2001 ,H0351.2002) T1-weighted MRI scans that are part of the human Allen brain atlas. The data is described [[http://help.brain-map.org/display/humanbrain/Allen+Human+Brain+Atlas|here]] and can be downloaded [[http://human.brain-map.org/mri_viewers/data|here]]. Note there are two more subjects with MRI scans that are part of the human Allen brain atlas. Those subjects had no microarray data measurements and hence they were excluded. A full description of the subjects can be found [[http://help.brain-map.org/display/humanbrain/Documentation?preview=/2818165/6651928/CaseQual_and_DonorProfiles.pdf|here.]] The recons were manually edited by LCN collaborators [[https://nru.dk/index.php/staff-list/phd-students/70-vincent-beliveau|Vincent Beliveau]] and [[https://nru.dk/index.php/staff-list/post-docs/62-melanie-ganz-benjaminsen|Melanie Ganz]] in order to get good surface reconstructions. Note that there were no subcortical segmentation edits performed, so in case you would like to use the subcortical measurments, you need to check and edit them yourself. '''[[ftp://surfer.nmr.mgh.harvard.edu/pub/data/AllenBrainFreeSurferv5.3.tar.gz|FreeSurfer v5.3 recons]]''' |
THIS PAGE HAS BEEN MOVED TO SHAREPOINT!
Please refer to this site/make edits here for the most updated information: https://partnershealthcare.sharepoint.com/sites/LCN/SitePages/Allen-Brain-Atlas---human-data.aspx
Allen Brain Atlas - human data
In the following you can find FreeSurfer recons constructed with v5.3 and soon also v6 of six (H0351.1009 ,H0351.1012 ,H0351.1015 ,H0351.1016 ,H0351.2001 ,H0351.2002) T1-weighted MRI scans that are part of the human Allen brain atlas. The data is described here and can be downloaded here. Note there are two more subjects with MRI scans that are part of the human Allen brain atlas. Those subjects had no microarray data measurements and hence they were excluded. A full description of the subjects can be found here.
The recons were manually edited by LCN collaborators Vincent Beliveau and Melanie Ganz in order to get good surface reconstructions. Note that there were no subcortical segmentation edits performed, so in case you would like to use the subcortical measurments, you need to check and edit them yourself.
FreeSurfer v6 recons:
coming soon!