## Note: This page was created with the CommandTemplate
##
## If you're modifying this page please take a look at the
## latest version of CommandTemplate to ensure that you're
## using the latest version of the CommandTemplate
##
## See HelpOnCommandTemplate for description of formatting

'''Index'''
<<TableOfContents>>


= Name =
surf-sess - ??

= Synopsis =
surf-sess  -analysis <analysisname> -contrast <contrsatname> [options]

= Arguments =
== Required Flagged Arguments ==
=== General ===
||-analysis <analysisname> || session-level functional analysis name||
||-contrast <contrastname> || contrast name||
=== Session ===
||  -sf <sessidfile>||
||  -df <srchdirfile>||
||  -s  <sessid>||
||  -d  <srchdir>||


== Optional Flagged Arguments ==
=== General ===
||  -map      <mapname>      || <sig>, minsig, iminsig, t||
||  -offset   <n>           || 0-based image offset||
||  -hemi     <hemisphere>   || <lh rh>||
||  -space    <spacename>    || space from which to surf (<native>, tal, sph)||
||   -spacedir <spacedir>    || get data from spacedir||
||   -subject  <subjectname>  || name of subject on which to paint (with group)||
||   -surf     <surfacename>  ||name of surface upon which to visualize||
||   -fthresh  <fthreshvalue> ||color map threshold (2.0)||
||   -fmid     <fmidvalue>    ||middle of the color map (5.0)||
||   -fslope   <fslopevalue>  ||slope of the color scale (0.1)||
||   -smoothsteps <nsteps>    ||spatial smoothing (2)||
||   -retinotopy  <map>       ||eccen, polar, fieldsign||
||   -flat                  ||display on flattened cortex (hemi.patch or hemi.occip.patch.flat for retinotopy)||
||   -patch <patchname>       ||display on flattened hemi.patchname||
||   -old                   ||use old version of tksurfer||


=== Session ===
||   -umask <umask>   || set unix file permission mask||
||   -version       || print version and exit||



= Ouputs =
??

= Description =
??

= Examples =
== Example 1 ==
??

== Example 2 ==
??

= Bugs =
??

= See Also =
??

= Links =
FreeSurfer, FsFast

= Methods Description =
{{{
??
}}}

= References =
[[References/Lastname###]]

= Reporting Bugs =
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

= Author/s =
DougGreve