Index

Name

pctsurfcon - Computes surface-wise gray/white contrast.

Synopsis

pctsurfcon --s subjid

Arguments

Required Flagged Arguments

--s subject

FreeSurfer subject name

Optional Flagged Arguments

--fsvol fsvol

use fsvol instead of rawavg

--b outbase

use outbase instead of w-g.pct (?h.w-g.pct.mgh)

--lh-only, --no-rh

compute left hemisphere only

--rh-only, --no-lh

compute right hemisphere only

--gm-proj-frac frac

GM projection fraction (default, 0.3)

--gm-proj-abs dist

GM projection distance (default is to use frac)

--wm-proj-abs dist

WM projection distance (default is 1mm)

--neg

Compute G-W instead of W-G

--no-mask

Do not mask out non-cortical regions

--tmp tmpdir

Temporary dir (implies --nocleanup)

--nocleanup

Do not delete temporary files

--version

Print version and exit

--help

Print help and exit

Outputs

<subjid>/surf/?h.w-g.pct.mgh

Gray to white matter signal intensity ratio, surface overlay

Description

pctsurfcon Calculates the gray to white matter signal intensity ratio (GWR).

Examples

Example 1

pctsurfcon --s bert

Bugs

None

See Also

wm-anat-snr

Links

None

Methods Description

description
description

References

References/Lastname###

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

pctsurfcon (last edited 2012-06-22 13:17:24 by LouisVinke)