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'''Index'''
<<TableOfContents>>


= Name =
 mris_twoclass - Computes the autocorrelation function of a curvature file

= Synopsis =
 mris_twoclass -o <output subject> [options] <hemi> <surf> <curv> <out prefix> 

      <c1_subject1> <c1_subject2>... 

      <c2_subject1> <c2_subject2>...


= Arguments =
== Positional Arguments ==
|| output subject  ||   ||    ||
|| hemi || Brain Hemisphere (r-right, l-left)  ||    ||
|| surf ||   ||    ||
|| curv ||   ||    ||
|| out prefix ||   ||    ||
|| <c1_subject> ...  || is a list of subjects from one class   ||   ||
|| <c2_subject> ...  || is a list of subjects from another class  ||   ||

== Required Flagged Arguments ==
|| -flag1 ?? || brief description || detailed description (eg, help file information) ||
|| -flag2 ?? || brief description || detailed description (eg, help file information) ||

== Optional Flagged Arguments ==
|| -wfile || not implemented yet (reading of *.w files)   ||  ||
|| -optimal || compute optimal smoothing kernel  ||  ||
|| -fixed <navgs>  || apply a fixed smoothing kernel  ||  ||
|| -conditions <c0> <c1>  || write out sigavg<c?> and sigvar<c?> files  ||  ||
|| -t <fthresh>  || specify F threshold   ||  ||
|| -o <subject>  || specify output subject name  ||  ||
|| -b  || perform bonferroni correction  ||  ||
 
= Outputs =
|| ?? || description ||
|| ?? || description ||

= Description =
This program will compute the autocorrelation function of a curvature file

= Examples =
== Example 1 ==
Command

description

== Example 2 ==
Command  
description

= Bugs =
None

= See Also =
[[othercommand1]], [[othercommand2]]

= Links =
FreeSurfer, FsFast

= Methods Description =
{{{
N/A
}}}

= References =
[[References/Lastname###]]

= Reporting Bugs =
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

= Author/s =
DougGreve, BruceFischl