Index TableOfContents
Name
mris_anatomical_stats - measures a number of anatomical properties
Synopsis
mris_anatomical_stats [options] <subjectname> <hemi> [<surfacename>]
Arguments
Required Positional Arguments
<subjectname> |
subject name |
<hemi> |
hemisphere |
Optional Positional Arguments
<surfacename> |
surface name |
Required Flagged Arguments
none
Optional Flagged Arguments
-i <low thresh> <hi thresh> |
only consider thicknesses in the specified range. |
-l <label file> |
limit calculations to specified label |
-t <thickness file> |
use specified file for computing thickness statistics |
-a <annotation file> |
compute properties for each label in the annotation file separately |
-b |
tabular output |
Outputs
Tabular output includes the following:
- number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard error (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name
Description
["mris_anatomical_stats"] computes a number of anatomical properties
Examples
Example 1
mris_anatomical_stats -a subjid/label/lh.aparc.annot -b subjid lh
Example 2
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Bugs
none
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
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References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>