U-Shape Bundle Analysis
Note: all of the source code can be found on the "dmri" branch on the Freesurfer Github page. The link can be found here: https://github.com/freesurfer/freesurfer/tree/dmri/anatomicuts
How to Run
Note by running the executable with no parameters will also give information on how to run the program
Full Program
Usage: ./runProject.sh <Patient File> <OPTION: DTI>
DTI is an option that allows more metrics about the FA values to be outputted based on 4 volumes
If specific files are wanted to be used or files cannot be found, run the programs individually (read below)
Individually
Group by Endpoints