• ThirdPartySoftware

• 3D Slicer

• FSL

• AFNI/NIfTI/SUMA

• SPM - Statistical Parametric Mapping

• NITRC

• iSurf - iPhone/iPad app

• Nipype - Neuroimaging in Python, w/ FreeSurfer interfaces

• Mindboggle-101 data - Manually labeled anatomical regions for 101 healthy subjects

• MNE - M/EEG data analysis using FreeSurfer meshes and surface registration

• Brainstorm - See Integration with FreeSurfer

MINC Toolkit

• Note: the MINC toolkit is already included in the Freesurfer 'full' installation (in $FREESURFER_HOME/mni)

• Source code bundle and README

• Pre-built binaries:

  • Linux rh9,fc2,centos4

  • Linux centos4_x86_64

  • Mac OS X