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FreeSurfer - FSL - FEAT Work Flows
FslWorkFlows describes processing workflows for applying FreeSurfer tools to FSL fMRI analysis.
An overview is found in this document: [http://surfer.nmr.mgh.harvard.edu/docs/ftp/pub/docs/freesurfer.feat.pdf Applying FreeSurfer Tools to FSL fMRI Analysis].
See also [http://surfer.nmr.mgh.harvard.edu/docs/ftp/pub/docs/freesurfer.groupanalysis.pdf Surface-based Group Analysis].