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|| 8:00 - 8:30 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] || tutorial || Allison Stevens || || 8:30 - 9:00 || Course Registration || sign-in || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff|&do=get]] || || 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl || || 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Bruce Fischl || || 10:30 - 10:45 || '''break''' || || || || 10:45 - 11:15 || Tkmedit/Tksurfer demonstration || demo || Doug Greve || || 11:15 - 11:45 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff || || 11:45 - 12:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve || || 12:15 - 12:45 || '''Working lunch''' Optional talk - [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing|&do=get]] || talk || Lilla Zollei || || 12:45 - 1:15 || '''Working lunch''' Optional talk - [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] || talk || Andre van der Kouwe || || 1:15 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve || || 2:15 - 2:45 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff || || 2:45 - 3:00 || '''break''' || || || || 3:00 - 3:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu || || 3:45 - 4:45 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff || || 4:45 - 5:00 || QDEC demonstration || demo || Nick Schmansky || || 5:00 - 5:45 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff || || 5:45 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky || || 5:45 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens || |
|| 9:00 - 9:30 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] || tutorial || Allison Stevens || || 9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]]|| talk || Lilla Zollei || || 10:00 - 10:15 || '''break''' || || || || 10:15 - 11:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Allison Stevens || || 11:15 - 11:45 || Tkmedit/Tksurfer demonstration || demo || Allison Stevens || || 11:45 - 12:45 || Lunch || -- || -- || || 12:45 - 1:30 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff || || 1:30 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Introduction to Surface-based Registration, Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei || || 2:15 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Data Troubleshooting|&do=get]] || talk, demo || Allison Stevens || || 3:15 - 3:30 || '''break''' || || || || 3:30 - 4:30 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] || tutorial || staff || || 4:30 - 5:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter || || 5:15 - 6:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing/Tractography|&do=get]] || talk || Lilla Zollei || |
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|| 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat || || 9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter || || 10:00 - 10:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]] || talk || David Salat || || 10:45 - 11:00 || '''break''' || || || || 11:00 - 11:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 11:30 - 12:30 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]], Troubleshooting Demonstration|| tutorial || staff, Allison || || 12:30 - 1:00 || '''Working lunch''' Optional demo - Step-by-Step Through a Recon || demo || TBD || || 1:00 - 1:30 || '''Working lunch''' Optional talk - Combined Gray Matter/White Matter Analysis of the Aging Brain || talk || David Salat || || 1:30 - 2:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve || || 2:45 - 3:45 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff || || 3:45 - 4:00 || '''break''' || || || || 4:00 - 5:00 || Future Directions of !FreeSurfer: || || || || 4:00 - 4:20 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei || || 4:20 - 4:40|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki || || 4:40 - 5:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl || || 5:00 - 5:30 || Question and Answer Session, FsQuiz || talk || staff || |
|| 9:00 - 9:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Lilla Zollei || || 9:45 - 10:45 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff || || 10:45 - 11:00 || QDEC demonstration || demo || Nick Schmansky || || 11:00 - 11:15 || '''break''' || || || || 11:15 - 12:00 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff || || 12:00 - 1:00 || Lunch || -- || -- || || 1:00 - 2:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Lilla Zollei || || 2:15 - 3:15 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff || || 3:15 - 3:30 || '''break''' || || || || 3:30 - 4:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Allison Stevens || || 4:00 - 4:30 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff || || 4:30 - 5:00 || Question and Answer Session || talk || staff || || 5:00 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || staff || || 5:00 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || staff || |
FreeSurfer Course, July 8th and 9th, 2010
Washington University, St. Louis, Missouri
Thursday, July 8th - Introduction / Single Subject / ROIs /Group Analysis
Time |
Title |
Type |
Lecturer |
9:00 - 9:30 |
optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly |
tutorial |
Allison Stevens |
9:30 - 10:00 |
talk |
Lilla Zollei |
|
10:00 - 10:15 |
break |
|
|
10:15 - 11:15 |
talk |
Allison Stevens |
|
11:15 - 11:45 |
Tkmedit/Tksurfer demonstration |
demo |
Allison Stevens |
11:45 - 12:45 |
Lunch |
-- |
-- |
12:45 - 1:30 |
tutorial |
staff |
|
1:30 - 2:15 |
Introduction to Surface-based Registration, Combined Volume and Surface Registration |
talk |
Lilla Zollei |
2:15 - 3:15 |
talk, demo |
Allison Stevens |
|
3:15 - 3:30 |
break |
|
|
3:30 - 4:30 |
tutorial |
staff |
|
4:30 - 5:15 |
talk |
Martin Reuter |
|
5:15 - 6:15 |
talk |
Lilla Zollei |
Friday, July 9th - Troubleshooting / Multi-Modal / Q&A / Future Directions
Time |
Title |
Type |
Lecturer |
9:00 - 9:45 |
talk |
Lilla Zollei |
|
9:45 - 10:45 |
tutorial |
staff |
|
10:45 - 11:00 |
QDEC demonstration |
demo |
Nick Schmansky |
11:00 - 11:15 |
break |
|
|
11:15 - 12:00 |
tutorial |
staff |
|
12:00 - 1:00 |
Lunch |
-- |
-- |
1:00 - 2:15 |
talk |
Lilla Zollei |
|
2:15 - 3:15 |
tutorial |
staff |
|
3:15 - 3:30 |
break |
|
|
3:30 - 4:00 |
talk |
Allison Stevens |
|
4:00 - 4:30 |
tutorial |
staff |
|
4:30 - 5:00 |
Question and Answer Session |
talk |
staff |
5:00 - |
optional - FreeSurfer Installation on Personal Laptops |
one-on-one |
staff |
5:00 - |
optional - Start Processing Your Own Data |
one-on-one |
staff |