Diff for "FsTutorial/Nov2013CourseSchedule"

Differences between revisions 3 and 4

FreeSurfer Course, November 4 - 6, 2013
MGH, Charlestown Navy Yard, Building 114, Room D1

8:30 - 10am Registration Desk is open

Monday, Nov 4th - Introduction / Single Subject / Registration / Troubleshooting

Time	Title	Type	Lecturer
9:00 - 9:30	optional - Unix Tutorial for FreeSurfer Users	tutorial	Allison Stevens
9:30 - 9:45	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens
9:45 - 10:00	break
10:00 - 10:30	Introduction to Freesurfer	talk	Bruce Fischl
10:30 - 11:30	Analyzing the Individual Subject	talk	Doug Greve
11:30 - 11:50	break
11:50 - 12:30	optional - A Non-physicist's Intro to MR SpinBench	talk	Dylan Tisdall
12:30 - 1:30	Lunch (Suggestions for where to eat)	--	--
1:30 - 2:00	Freeview/Tksurfer demonstration	demo	Doug Greve
2:00 - 2:30	Interaction with Individual Subject Data Tutorial	tutorial	staff
2:30 - 3:00	FreeSurfer Troubleshooting	talk	Allison Stevens
3:00 - 3:20	break
3:20 - 4:20	Quality Checking a Recon	demo	Allison Stevens
4:20 - 5:20	Troubleshooting Tutorial	tutorial	staff

Tuesday, Nov 5th - ROIs / Longitudinal / Multimodal / Group Analysis

Time	Title	Type	Lecturer
9:00 - 9:40	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Doug Greve
9:40 - 10:20	ROI Analysis	talk	Doug Greve
10:20 - 10:40	break
10:40 - 11:10	ROI Analysis Tutorial	tutorial	staff

10:30 - 11:30	Group Analysis / GLM / Multiple Comparisons	talk	Melanie Ganz
11:30 - 11:50	QDEC demonstration	demo	Nick Schmansky
11:50 - 12:50	Lunch	--	--
12:20 - 12:50	Optional Lunch Talk- MRI Acquisition Methods for Morphometry	talk	Andre van der Kouwe
12:50 - 1:50	Group Analysis / Multiple Comparisons - mri_glmfit Tutorial	tutorial	staff
12:50 - 1:50	Group Analysis - qdec Tutorial	tutorial	staff
1:50 - 2:20	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
2:20 - 2:40	break
2:40 - 3:40	Longitudinal Tutorial	tutorial	staff
3:40 - 4:40	Multi-Modal Integration	talk	Doug Greve
4:40 - 5:00	Registration Methods	talk	Lilla Zollei
5:00 - 5:45	Multi-Modal Integration Tutorial	tutorial	staff

Boston Beer Works location information here and here.
Meet us at 6:10pm at the front of Building 149 (map to be provided soon).
If you miss us, we are taking the 6:15pm MGH/Navy Yard shuttle to North Station (the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.

Wednesday, Nov 6th - fMRI / Diffusion / Q&A

Time	Title	Type	Lecturer
9:00 - 9:40	Introduction to Diffusion MRI	talk	Anastasia Yendiki
9:40 - 10:10	Diffusion Processing Tutorial	tutorial	staff
2:50 - 3:10	break
3:10 - 3:40	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Anastasia Yendiki
3:40 - 4:25	Tracula Tutorial	tutorial	staff

12:40 - 1:40	Lunch	--	--
1:10 - 1:40	Optional Lunch Talk- Motion-compensated neuroanatomical imaging	talk	Dylan Tisdall
2:50 - 3:10	break & Evaluation
4:25 - 5:00	Future Directions - Optical Coherence Tomography	talk	Caroline Magnain
5:00 - 5:30	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

FsTutorial/Nov2013CourseSchedule (last edited 2017-09-26 11:35:14 by MorganFogarty)

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+:30 - 10am Registration Desk is open
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-||8:30 - 10:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||

||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Maritza Ebling ||

||9:30 - 9:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Melanie Ganz ||
+||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Allison Stevens ||

||9:30 - 9:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Allison Stevens ||
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-||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Doug Greve ||
+||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Bruce Fischl ||
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-||11:50 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||
+||11:50 - 12:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall ||
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-||2:00 - 2:30 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
+||2:00 - 2:30 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2011.jpg|staff]] ||
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-||9:00 - 9:40  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||

||9:40 - 10:10  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||

||10:10 - 10:30 ||'''break''' || ||
+||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve ||

||9:40 - 10:20  ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve ||

||10:20 - 10:40 ||'''break''' || ||

||10:40 - 11:10  ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
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-||''12:35 - 1:20'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||''talk'' ||''Dylan Tisdall'' ||