Differences between revisions 11 and 12
Deletions are marked like this. Additions are marked like this.
Line 7: Line 7:
The .mgh file format is used to store high-resolution structural data and other data which are to be overlaid on the high-resolution structural volume. An .mgz file is a .mgh file that has been compressed with ZLib. The .mgh file format is used to store high-resolution structural data and other data which are to be overlaid on the high-resolution structural volume. A .mgz file is a .mgh file that has been compressed with ZLib.
Line 9: Line 9:
The MGH format is proprietary, defined by the NMR Center (at Massachusetts General Hospital). Short of having a formal specification of this format, the next best thing is a snapshot of the C code declaring the MGH format, and examples of how a file is read and written: The MGH format is proprietary, defined by the NMR Center (at Massachusetts General Hospital). Short of having a formal specification of this format, the next best thing is a snapshot of the C code showing how the file is read and written:
Line 11: Line 11:
 * attachment:mri.h - an .mgh file merely stores the '''MRI''' data structure, defined in mri.h  * attachment:mri.h - a .mgh file merely stores the '''MRI''' data structure, defined in mri.h
Line 15: Line 15:
 * attachment:mriio.c - see MRIreadHeader, mri_read, and mri_write routines  * attachment:mriio.c - see 'MRIreadHeader', 'mri_read', and 'mri_write' routines
Line 17: Line 17:
 * attachment:mri.c - contains mriio.c helper routines  * attachment:mri.c - contains helper routines used in mriio.c
Line 19: Line 19:
 * attachment:mri_info.c - see do_file routine  * attachment:mri_info.c - see 'do_file' routine
Line 21: Line 21:
 * attachment:mri_convert.c  * attachment:mri_convert.c - big example of reading and writing .mgh and .mgz file

[wiki:FreeSurferWiki top] | [wiki:FileFormats previous]

The MGH/MGZ Volume Format

WORK IN PROGRESS

The .mgh file format is used to store high-resolution structural data and other data which are to be overlaid on the high-resolution structural volume. A .mgz file is a .mgh file that has been compressed with ZLib.

The MGH format is proprietary, defined by the NMR Center (at Massachusetts General Hospital). Short of having a formal specification of this format, the next best thing is a snapshot of the C code showing how the file is read and written:

  • attachment:mri.h - a .mgh file merely stores the MRI data structure, defined in mri.h

  • attachment:matrix.h - MRI data structure contains MATRIX
  • attachment:mriio.c - see 'MRIreadHeader', 'mri_read', and 'mri_write' routines
  • attachment:mri.c - contains helper routines used in mriio.c
  • attachment:mri_info.c - see 'do_file' routine
  • attachment:mri_convert.c - big example of reading and writing .mgh and .mgz file

FsTutorial/MghFormat (last edited 2008-04-29 11:46:03 by localhost)