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==== Monday, April 1st - Introduction / Single Subject Analysis / ROI Analysis ==== ==== Monday, September 23rd - Introduction / Single Subject Analysis / ROI Analysis ====
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==== Tuesday, April 2nd - Group Analysis / Longitudinal Analysis / Troubleshooting ==== ==== Tuesday, September 24th - Group Analysis / Longitudinal Analysis / Troubleshooting ====
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==== Wednesday, April 3rd - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition ==== ==== Wednesday, September 25th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition ====
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==== Thursday, April 4th - fMRI Analysis / Multimodal Analysis / Future Directions ==== ==== Thursday, September 26th - fMRI Analysis / Multimodal Analysis / Future Directions ====

Fall 2019 FreeSurfer Course: September 23rd - 26th

8:00 - 9:30am Registration Desk Open

* Indicates an optional technical talk. These talks have great content. They are related to, but not directly about, the FreeSurfer processing stream.
** Indicates an optional talk that covers basic/beginner material.
*** Indicates optional extra time to work on tutorials and/or ask questions about your own data.

Monday, September 23rd - Introduction / Single Subject Analysis / ROI Analysis

Time

Title

Type

Lecturer

8:30 - 9:00

** Intro to Linux for FreeSurfer Users

talk/demo

Andrew Hoopes

9:00 - 9:15

** Intro to FreeSurfer Jargon

talk

Caroline Magnain

9:15 - 9:30

break

9:30 - 10:15

Introduction to Freesurfer

talk

Bruce Fischl

10:15 - 11:25

Analyzing the Individual Subject

talk

Doug Greve

11:25 - 11:45

break

11:45 - 12:00

Freeview demonstration

demo

Bram Diamond

12:00 - 12:30

Introduction to FreeSurfer Output

tutorial

staff

12:30 - 1:30

Lunch (Suggestions for where to eat)

--

--

1:30 - 1:45

Introduction to FreeSurfer Output

tutorial

staff

1:45 - 2:15

Surface-based Analysis: Intersubject Registration & Smoothing

talk

Iman Aganj

2:15 - 2:35

break

2:35 - 3:05

ROI Analysis

talk

3:05 - 3:50

ROI Analysis Tutorial

tutorial

staff

3:50 - 4:20

Structural & Functional Data Integration

talk

David Salat

4:20 - 4:50

Practice Working with Data

tutorial

staff

Answers to online questions here

Tuesday, September 24th - Group Analysis / Longitudinal Analysis / Troubleshooting

Time

Title

Type

Lecturer

8:00 - 9:00

*** Optional session, extra support for structural processing and ROI analysis

--

Research Techs

9:00 - 9:50

Group Analysis

talk

Viviana Siless

9:50 - 10:30

Group Analysis Tutorial

tutorial

staff

10:30 - 10:50

break

10:50 - 11:30

Multiple Comparisons

talk

Doug Greve

11:30 - 12:00

Multiple Comparisons Tutorial

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 1:45

FreeSurfer Troubleshooting

talk

Bruce Fischl

1:45 - 2:45

Troubleshooting Tutorial

tutorial

staff

2:45 - 3:05

break

3:05 - 4:05

Quality Checking a Recon

demo

Leah Morgan, Allison Stevens

4:05 - 4:50

Longitudinal FreeSurfer

talk

Malte Hoffmann

4:50 - 5:30

LongitudinalTutorial

tutorial

staff

5:30 - 7:30

Social Night in the atrium of Bldg. 149

Snacks and Beverages Served

you!

Answers to online questions here

Wednesday, September 25th - Multimodal Analysis / Diffusion Analysis / fMRI Analysis / MR Acquisition

Time

Title

Type

Lecturer

8:00 - 9:00

*** Optional session, extra support for questions on longitudinal processing and working with pediatric data

--

Lilla Zöllei, other staff

9:00 - 9:30

** Intro to MR (SpinBench)

talk

Robert Frost

9:30 - 10:00

Multi-Modal Integration, Part 1: Registration

talk

Aina Frau-Pascual

10:00 - 10:30

Multi-Modal Integration Tutorial, Part 1

tutorial

staff

10:30 - 10:50

break

10:50 - 11:05

** Intro to Diffusion MRI Physics

talk

Robert Frost

11:05 - 11:45

Introduction to Diffusion MRI

talk

Anastasia Yendiki

11:45 - 12:30

Diffusion Processing Tutorial

tutorial

staff

12:30 - 1:30

Lunch

--

--

1:30 - 2:20

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Anastasia Yendiki

2:20 - 3:20

Tracula Tutorial

tutorial

staff

3:20 - 3:40

break

3:40 - 3:50

Longitudinal TRACULA

talk

Anastasia Yendiki

3:50 - 4:50

Basics of fMRI Analysis

talk

Jingyuan Chen

4:50 - 5:30

* Running FreeSurfer in the cloud with AWS batch

talk

Paul Wighton

Answers to online questions here

The FreeSurfer Evaluation is here!

Thursday, September 26th - fMRI Analysis / Multimodal Analysis / Future Directions

Time

Title

Type

Lecturer

8:00 - 9:00

*** Optional session, extra support for fMRI and Diffusion Questions

--

staff

9:00 - 9:30

FSFAST, Part 1: Preprocessing

talk

Doug Greve

9:30 - 10:00

FSFAST Tutorial, Part 1

tutorial

staff

10:00 - 10:20

break & Evaluation

10:20 - 11:20

FSFAST, Part 2: GLM Analysis

talk

Doug Greve

11:20 - 12:00

FSFAST Tutorial, Part 2

tutorial

staff

12:00 - 1:00

Lunch

--

--

1:00 - 1:30

* An Overview of Registration Methods

talk

Lilla Zöllei

1:30 - 1:45

Resting State fMRI

talk

Doug Greve

1:45 - 2:15

Multi-Modal Integration, Part 2: Group Analysis

talk

Doug Greve

2:15 - 3:00

Multi-Modal Integration Tutorial, Part 2

tutorial

staff

3:00 - 3:15

break

3:15 - 3:30

FreeSurfer vs. VBM

talk

Doug Greve

3:30 - 4:30

Future Directions

talk

FS Development Team

4:30 - 5:00

Question & Answer Session

--

staff

Answers to online questions here


FreeSurfer Merchandise

Enjoyed our course? Purchase our awesome FreeSurfer T-shirts here.

FsTutorial/Fall2019CourseSchedule (last edited 2019-08-07 08:41:31 by DevaniCordero)