FreeSurfer Course, August 10-12

Wednesday, August 10th - Introduction / Single Subject Analysis /Troubleshooting

Time

Title

Type

Lecturer

9:00 - 9:30

optional - Unix Tutorial for FreeSurfer Users

talk/tutorial

Allison Stevens

9:30 - 9:45

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens & Lilla Zollei

9:45 - 10:00

break

10:00 - 10:30

Introduction to Freesurfer

talk

Emily Lindemer

10:30 - 11:30

Analyzing the Individual Subject

talk

Emily Lindemer

11:30 - 11:45

Freeview demonstration

demo

Allison Stevens

11:45 - 12:15

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:15 - 1:15

Lunch

--

--

1:15 - 1:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

1:45 - 2:30

FreeSurfer Troubleshooting

talk

Allison Stevens

2:30 - 2:45

Freeview Troubleshooting demonstration

demo

Allison Stevens

2:45 - 3:05

break

3:05 - 4:05

Troubleshooting Tutorial

tutorial

staff

4:05 - 5:05

Quality Checking a Recon

demo

Allison Stevens

5:05 - 5:45

Surface-based Analysis: Intersubject Smoothing & Registration

talk

Lilla Zollei

Thursday, August 11th - Group Analysis / ROI Analysis / Longitudinal

Time

Title

Type

Lecturer

9:00 - 9:40

NRU - A high resolution in vivo atlas of the human brain's serotonin system

9:40 - 10:20

Group Analysis

talk

Emily Lindemer

10:20 - 10:40

break

10:40 - 11:20

Group Analysis Tutorial

tutorial

staff

11:20 - 11:40

Multiple Comparisons

talk

Emily Lindemer

11:40 - 12:00

QDEC demonstration

demo

Martin Reuter

12:00 - 1:00

Lunch

--

--

1:00 - 1:20

Multiple Comparisons Tutorial

tutorial

staff

1:20 - 2:00

QDEC Tutorial

tutorial

staff

2:00 - 2:30

ROI Analysis

talk

Martin Reuter

2:30 - 2:50

break

2:50 - 3:20

ROI Analysis Tutorial

tutorial

staff

3:20 - 3:50

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

3:50 - 4:30

Longitudinal Tutorial

tutorial

staff

5:30 - 5:45

Question and Answer Session (Answers to online questions here)

talk

staff

Friday, August 12th - Multimodal / Diffusion / Future Directions

Time

Title

Type

Lecturer

9:00 - 10:00

Multi-Modal Integration

talk

Martin Reuter

10:00 - 11:00

Multi-Modal Integration Tutorial

tutorial

staff

11:00 - 11:15

break

11:15 - 12:00

Introduction to Diffusion MRI

talk

Lilla Zollei

12:00 - 12:30

Diffusion Tutorial

tutorial

staff

11:40 - 12:40

Lunch

--

--

11:40 - 12:40

NRU - PLS applied to PET data in SAD

--

--

2:25 - 2:45

break & Evaluation

2:45 - 3:35

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Lilla Zollei

3:35 - 4:20

Tracula Tutorial

tutorial

staff

4:20 - 4:50

Future Directions

talk

Martin Reuter

4:50 - 5:05

Question and Answer Session (Answers to online questions here), FsQuiz

talk

staff

No time?

optional technical talk - Registration Methods

talk

Lilla Zollei