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||5:05 - 5:35 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Lilla Zollei ||
||5:05 - 5:45 ||NRU - A high resolution in vivo atlas of the human brain's serotonin system || || ||
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||9:00 - 9:40 ||NRU - A high resolution in vivo atlas of the human brain's serotonin system || || ||
||9:40 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
||10:30 - 10:50 ||'''break''' || ||
||10:50 - 11:30 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:30 - 11:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Emily Lindemer ||
||11:50 - 12:10 ||QDEC demonstration ||demo ||Martin Reuter ||
||12:10 - 1:10 ||'''Lunch''' ||-- ||-- ||
||1:10 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:30 - 2:10 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:10 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Martin Reuter ||
||2:40 - 3:00 ||'''break''' || ||
||3:00 - 3:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||4:00 - 4:40 ||[[Fs
Tutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Lilla Zollei ||
||9:30 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
||10:20 - 10:40 ||'''break''' || ||
||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff ||
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Emily Lindemer ||
||11:40 - 12:00 ||QDEC demonstration ||demo ||Martin Reuter ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff ||
||1:20 - 2:00 ||[[FsTutorial/QdecGroupAnalysis_freeview|QDEC Tutorial]] ||tutorial ||staff ||
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Martin Reuter ||
||2:30 - 2:50 ||'''break''' || ||
||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter ||
||3:5
0 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff ||
||4:30 - 5:30 ||NRU - P
LS applied to PET data in SAD ||-- ||-- ||
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||12:00 - 12:30 || Diffusion Tutorial || tutorial || staff||
||11:40 - 12:40 ||'''Lunch''' ||-- ||-- ||
||11:40 - 12:40 ||NRU - PLS applied to PET data in SAD ||-- ||-- ||
||2:25 - 2:45 ||'''break''' & Evaluation || ||
||2:45 - 3:35
||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Lilla Zollei||
||3:35 - 4:20 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||4:20 - 4:50 ||Future Directions ||talk ||Martin Reuter ||
||12:00 - 1:00 ||'''Lunch''' ||-- ||-- ||
||1:00 - 1:40 || Diffusion Tutorial || tutorial || staff||
||1:40 -
2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Lilla Zollei||
||2:30 - 3:10 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||3:10 - 3:30 ||'''break''' & Evaluation || ||
||No time? ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||
||
4:20 - 4:50 ||Future Directions ||talk ||Emily Lindemer ||
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||No time? ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei ||

FreeSurfer Course, August 10-12

Wednesday, August 10th - Introduction / Single Subject Analysis /Troubleshooting

Time

Title

Type

Lecturer

9:00 - 9:30

optional - Unix Tutorial for FreeSurfer Users

talk/tutorial

Allison Stevens

9:30 - 9:45

optional - Intro to FreeSurfer Jargon

talk

Allison Stevens & Lilla Zollei

9:45 - 10:00

break

10:00 - 10:30

Introduction to Freesurfer

talk

Emily Lindemer

10:30 - 11:30

Analyzing the Individual Subject

talk

Emily Lindemer

11:30 - 11:45

Freeview demonstration

demo

Allison Stevens

11:45 - 12:15

Interaction with Individual Subject Data Tutorial

tutorial

staff

12:15 - 1:15

Lunch

--

--

1:15 - 1:45

Interaction with Individual Subject Data Tutorial

tutorial

staff

1:45 - 2:30

FreeSurfer Troubleshooting

talk

Allison Stevens

2:30 - 2:45

Freeview Troubleshooting demonstration

demo

Allison Stevens

2:45 - 3:05

break

3:05 - 4:05

Troubleshooting Tutorial

tutorial

staff

4:05 - 5:05

Quality Checking a Recon

demo

Allison Stevens

5:05 - 5:45

NRU - A high resolution in vivo atlas of the human brain's serotonin system

Thursday, August 11th - Group Analysis / ROI Analysis / Longitudinal

Time

Title

Type

Lecturer

9:00 - 9:30

Surface-based Analysis: Intersubject Smoothing & Registration

talk

Lilla Zollei

9:30 - 10:20

Group Analysis

talk

Emily Lindemer

10:20 - 10:40

break

10:40 - 11:20

Group Analysis Tutorial

tutorial

staff

11:20 - 11:40

Multiple Comparisons

talk

Emily Lindemer

11:40 - 12:00

QDEC demonstration

demo

Martin Reuter

12:00 - 1:00

Lunch

--

--

1:00 - 1:20

Multiple Comparisons Tutorial

tutorial

staff

1:20 - 2:00

QDEC Tutorial

tutorial

staff

2:00 - 2:30

ROI Analysis

talk

Martin Reuter

2:30 - 2:50

break

2:50 - 3:20

ROI Analysis Tutorial

tutorial

staff

3:20 - 3:50

Longitudinal FreeSurfer see also: LongitudinalProcessing

talk

Martin Reuter

3:50 - 4:30

Longitudinal Tutorial

tutorial

staff

4:30 - 5:30

NRU - PLS applied to PET data in SAD

--

--

Friday, August 12th - Multimodal / Diffusion / Future Directions

Time

Title

Type

Lecturer

9:00 - 10:00

Multi-Modal Integration

talk

Martin Reuter

10:00 - 11:00

Multi-Modal Integration Tutorial

tutorial

staff

11:00 - 11:15

break

11:15 - 12:00

Introduction to Diffusion MRI

talk

Lilla Zollei

12:00 - 1:00

Lunch

--

--

1:00 - 1:40

Diffusion Tutorial

tutorial

staff

1:40 - 2:30

TRActs Constrained by UnderLying Anatomy (TRACULA)

talk

Lilla Zollei

2:30 - 3:10

Tracula Tutorial

tutorial

staff

3:10 - 3:30

break & Evaluation

No time?

optional technical talk - Registration Methods

talk

Lilla Zollei

4:20 - 4:50

Future Directions

talk

Emily Lindemer

4:50 - 5:05

Question and Answer Session (Answers to online questions here), FsQuiz

talk

staff

FsTutorial/CphAug2016CourseSchedule (last edited 2017-09-26 11:40:50 by MorganFogarty)