Diff for "FsTutorial/CphAug2016CourseSchedule"

Differences between revisions 5 and 6

FreeSurfer Course, August 10-12

Wednesday, August 10th - Introduction / Single Subject Analysis /Troubleshooting

Time	Title	Type	Lecturer
9:00 - 9:30	optional - Unix Tutorial for FreeSurfer Users	talk/tutorial	Allison Stevens
9:30 - 9:45	optional - Intro to FreeSurfer Jargon	talk	Allison Stevens & Lilla Zollei
9:45 - 10:00	break
10:00 - 10:30	Introduction to Freesurfer	talk	Emily Lindemer
10:30 - 11:30	Analyzing the Individual Subject	talk	Emily Lindemer
11:30 - 11:45	Freeview demonstration	demo	Allison Stevens
11:45 - 12:15	Interaction with Individual Subject Data Tutorial	tutorial	staff
12:15 - 1:15	Lunch	--	--
1:15 - 1:45	Interaction with Individual Subject Data Tutorial	tutorial	staff
1:45 - 2:30	FreeSurfer Troubleshooting	talk	Allison Stevens
2:30 - 2:45	Freeview Troubleshooting demonstration	demo	Allison Stevens
2:45 - 3:05	break
3:05 - 4:05	Troubleshooting Tutorial	tutorial	staff
4:05 - 5:05	Quality Checking a Recon	demo	Allison Stevens
5:05 - 5:45	Surface-based Analysis: Intersubject Smoothing & Registration	talk	Lilla Zollei

Thursday, August 11th - Group Analysis / ROI Analysis / Longitudinal

Time	Title	Type	Lecturer
9:00 - 9:40	NRU - A high resolution in vivo atlas of the human brain's serotonin system
9:40 - 10:20	Group Analysis	talk	Emily Lindemer
10:20 - 10:40	break
10:40 - 11:20	Group Analysis Tutorial	tutorial	staff
11:20 - 11:40	Multiple Comparisons	talk	Emily Lindemer
11:40 - 12:00	QDEC demonstration	demo	Martin Reuter
12:00 - 1:00	Lunch	--	--
1:00 - 1:20	Multiple Comparisons Tutorial	tutorial	staff
1:20 - 2:00	QDEC Tutorial	tutorial	staff
2:00 - 2:30	ROI Analysis	talk	Martin Reuter
2:30 - 2:50	break
2:50 - 3:20	ROI Analysis Tutorial	tutorial	staff
3:20 - 3:50	Longitudinal FreeSurfer see also: LongitudinalProcessing	talk	Martin Reuter
3:50 - 4:30	Longitudinal Tutorial	tutorial	staff
5:30 - 5:45	Question and Answer Session (Answers to online questions here)	talk	staff

Friday, August 12th - Multimodal / Diffusion / Future Directions

Time	Title	Type	Lecturer
9:00 - 10:00	Multi-Modal Integration	talk	Martin Reuter
10:00 - 11:00	Multi-Modal Integration Tutorial	tutorial	staff
11:00 - 11:15	break
11:15 - 12:00	Introduction to Diffusion MRI	talk	Lilla Zollei
12:00 - 12:30	Diffusion Tutorial	tutorial	staff
11:40 - 12:40	Lunch	--	--
11:40 - 12:40	NRU - PLS applied to PET data in SAD	--	--
2:25 - 2:45	break & Evaluation
2:45 - 3:35	TRActs Constrained by UnderLying Anatomy (TRACULA)	talk	Lilla Zollei
3:35 - 4:20	Tracula Tutorial	tutorial	staff
4:20 - 4:50	Future Directions	talk	Martin Reuter
4:50 - 5:05	Question and Answer Session (Answers to online questions here), FsQuiz	talk	staff

No time?

optional technical talk - Registration Methods

talk

Lilla Zollei

FsTutorial/CphAug2016CourseSchedule (last edited 2017-09-26 11:40:50 by MorganFogarty)

-Deletions are marked like this.
+Additions are marked like this.
 Line 6:
-||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Stevens ||

||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Allison Stevens & Lilla Zollei ||

||9:15 - 9:30 ||'''break''' || || ||

||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Emily Lindemer ||

||10:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Emily Lindemer ||

||11:00 - 11:40 ||NRU - A high resolution in vivo atlas of the human brain's serotonin system || || ||

||11:40 - 12:40 ||'''Lunch''' ||-- ||-- ||

||12:40 - 1:00 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Stevens ||

||1:00 - 2:00 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] ||

||2:00 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Allison Stevens ||

||2:45 - 3:00 ||Freeview Troubleshooting demonstration ||[[FreeviewGuide|demo]] ||Allison Stevens ||

||3:00 - 3:20 ||'''break''' || || ||

||3:20 - 4:20 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||

||4:20 - 5:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Allison Stevens ||

||5:20 - 5:30 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff ||
+||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||talk/tutorial ||Allison Stevens ||

||9:30 - 9:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk || Allison Stevens & Lilla Zollei ||

||9:45 - 10:00 ||'''break''' || || ||

||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Emily Lindemer ||

||10:30 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Emily Lindemer ||

||11:30 - 11:45 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Allison Stevens ||

||11:45 - 12:15 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||

||12:15 - 1:15 ||'''Lunch''' ||-- ||-- ||

||1:15 - 1:45 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||

||1:45 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Allison Stevens ||

||2:30 - 2:45 ||Freeview Troubleshooting demonstration ||[[FreeviewGuide|demo]] ||Allison Stevens ||

||2:45 - 3:05 ||'''break''' || || ||

||3:05 - 4:05 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff ||

||4:05 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Allison Stevens ||

||5:05 - 5:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Lilla Zollei ||
 Line 25:
-||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Lilla Zollei ||

||9:00 - 9:30 ||** [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FS_GLM_Spring2016.ppt|Basics of Group Analysis]] ||talk ||Emily Lindemer ||

||9:30 - 10:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
+||9:00 - 9:40 ||NRU - A high resolution in vivo atlas of the human brain's serotonin system || || ||

||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ERL.ppt|Group Analysis]] ||talk ||Emily Lindemer ||
-Line 46:
+Line 45:
-||8:30 - 9:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration]] ||talk ||Lilla Zollei ||

||1:10 - 2:25 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

||9:15 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Lilla Zollei ||
+||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.dti.ppt|Multi-Modal Integration]] ||talk ||Martin Reuter ||

||10:00 - 11:00 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff ||

||11:00 - 11:15 ||'''break''' || ||

||11:15 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Lilla Zollei ||

||12:00 - 12:30 || Diffusion Tutorial || tutorial || staff||