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'''!FreeSurfer Course, May 5-7, 2014''' | '''!FreeSurfer Course, March 9-10, 2014''' |
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=== 8:00 - 9:30am Registration Desk Open === ==== Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting ==== |
=== 8:00 - 9:00am Registration Desk Open === ==== Monday, March 9th - Introduction / Single Subject Analysis /Troubleshooting ==== |
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||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial ||Ani || ||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Ani|| ||9:15 - 9:30 ||'''break''' || || || ||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||AY || ||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Lee || ||11:10 - 11:30 ||'''break''' || || || ||11:30 - 12:10 ||'' '' || || || ||12:10 - 1:10 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- || ||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee || ||1:30 - 2:30 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Ani || ||3:00 - 3:20 ||'''break''' || || || ||4:00 - 5:00 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff || ||5:00 - 5:15 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff || |
||9:00 - 9:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial ||Ani || ||9:30 - 9:45 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||Ani|| ||9:45 - 10:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||AY || ||10:15 - 10:45 ||'''break''' || || || ||10:45 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Lee || ||11:45 - 12:00 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Lee ||12:00 - 1:00 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- || ||1:00 - 2:00 ||[[FsTutorial/OutputData_freeview|Interaction with Individual Subject Data Tutorial]] ||tutorial ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/staff2013.jpg|staff]] || ||2:00 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||Ani || ||2:45 - 3:15 ||'''break''' || || || ||3:15 - 4:15 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff || ||4:15 - 5:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Ani || |
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==== Tuesday, May 6th - Group Analysis / ROI Analysis / Longitudinal ==== | ==== Tuesday, March 10th - Group Analysis / ROI Analysis / Longitudinal ==== |
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|| || || || || ||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||Ani || |
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||10:20 - 10:40 ||'''break''' || || ||10:40 - 11:20 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff || ||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Anastasia Yendiki || |
||10:20 - 10:50 ||'''break''' || || ||10:50 - 11:30 ||[[FsTutorial/GroupAnalysis|Group Analysis Tutorial]] ||tutorial ||staff || ||11:30 - 12:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Anastasia Yendiki || |
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||1:00 - 1:20 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff || ||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Lee || ||2:30 - 2:50 ||'''break''' || || ||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || || || || || || ||6:05 - 6:20 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]) ||talk ||staff || |
||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/GroupAnalysis#ClusterwiseCorrectionforMultipleComparisons|Multiple Comparisons Tutorial]] ||tutorial ||staff || ||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||Lee || ||2:00 - 3:00 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || ||2:00 - 3:30 ||'''break''' || || ||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Iman || ||4:00 - 4:45 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff || |
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==== Wednesday, May 7th - fMRI / Multimodal / Future Directions / Q&A ==== ##[[https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA |The Course Evaluation has been posted. ]] Please feel free to start filling it out! |
==== Wednesday, March 11th - Multimodal / Diffusion / Q&A ==== |
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||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Iman || ||3:50 - 4:30 ||[[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Tutorial]] ||tutorial ||staff || ||4:30 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki || ||8:00 - 8:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Iman || ||11:40 - 12:40 ||'''Lunch''' ||-- ||-- || ||12:40 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Iman || ||1:40 - 2:55 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff || ||2:55 - 3:15 ||'''break''' & Evaluation || || ||3:15 - 4:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||4:05 - 4:50 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || || || || || || ||5:20 - 5:50 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff || ##'''The !FreeSurfer Evaluation is [[ https://docs.google.com/spreadsheet/viewform?formkey=dGZKM24xb1NpRDRJOHhwdmxCUm9CbFE6MA|here]]!''' |
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Iman || ||10:00 - 10:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff || ||10:30 - 11:00 ||'''break''' || || ||11:00 - 11:30 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff || ||11:30 - 12:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki || ||12:10 - 1:10 ||'''Lunch''' ||-- ||-- || ||1:10 - 1:40 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Iman || ||1:40 - 2:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||2:40 - 3:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||3:00 - 3:30 ||'''break''' & Evaluation || || ||3:30 - 4:00 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||4:00 - 4:20 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff || |
FreeSurfer Course, March 9-10, 2014
8:00 - 9:00am Registration Desk Open
Monday, March 9th - Introduction / Single Subject Analysis /Troubleshooting
Time |
Title |
Type |
Lecturer |
9:00 - 9:30 |
optional - Unix Tutorial for FreeSurfer Users |
tutorial |
Ani |
9:30 - 9:45 |
optional - Intro to FreeSurfer Jargon |
talk |
Ani |
9:45 - 10:15 |
talk |
AY |
|
10:15 - 10:45 |
break |
|
|
10:45 - 11:45 |
talk |
Lee |
||11:45 - 12:00 ||Freeview demonstration ||demo ||Lee
12:00 - 1:00 |
-- |
-- |
|
1:00 - 2:00 |
tutorial |
||
2:00 - 2:45 |
talk |
Ani |
|
2:45 - 3:15 |
break |
|
|
3:15 - 4:15 |
tutorial |
staff |
|
4:15 - 5:15 |
demo |
Ani |
Tuesday, March 10th - Group Analysis / ROI Analysis / Longitudinal
Time |
Title |
Type |
Lecturer |
9:00 - 9:40 |
Surface-based Analysis: Intersubject Smoothing & Registration |
talk |
Iman |
9:40 - 10:20 |
talk |
Anastasia Yendiki |
|
10:20 - 10:50 |
break |
|
|
10:50 - 11:30 |
tutorial |
staff |
|
11:30 - 12:00 |
talk |
Anastasia Yendiki |
|
12:00 - 1:00 |
Lunch |
-- |
-- |
1:00 - 1:30 |
tutorial |
staff |
|
1:30 - 2:00 |
talk |
Lee |
|
2:00 - 3:00 |
tutorial |
staff |
|
2:00 - 3:30 |
break |
|
|
3:30 - 4:00 |
talk |
Iman |
|
4:00 - 4:45 |
tutorial |
staff |
Wednesday, March 11th - Multimodal / Diffusion / Q&A
Time |
Title |
Type |
Lecturer |
9:00 - 10:00 |
talk |
Iman |
|
10:00 - 10:30 |
tutorial |
staff |
|
10:30 - 11:00 |
break |
|
|
11:00 - 11:30 |
tutorial |
staff |
|
11:30 - 12:10 |
talk |
Anastasia Yendiki |
|
12:10 - 1:10 |
Lunch |
-- |
-- |
1:10 - 1:40 |
optional technical talk - Registration Methods |
talk |
Iman |
1:40 - 2:40 |
talk |
Anastasia Yendiki |
|
2:40 - 3:00 |
tutorial |
staff |
|
3:00 - 3:30 |
break & Evaluation |
|
|
3:30 - 4:00 |
tutorial |
staff |
|
4:00 - 4:20 |
Question and Answer Session (Answers to online questions here), FsQuiz |
talk |
staff |