Deletions are marked like this. | Additions are marked like this. |
Line 2: | Line 2: |
|
|
Line 9: | Line 7: |
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial || Ender Konukoglu || ||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk || Ender Konukoglu || |
||8:30 - 9:00 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] ||tutorial ||RA || ||9:00 - 9:15 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon]] ||talk ||RA || |
Line 12: | Line 10: |
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk || Bruce Fischl || ||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk || Bruce Fischl || |
||9:30 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||? || ||10:00 - 11:10 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||? || |
Line 15: | Line 13: |
||11:30 - 12:10 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' ||talk ||Dylan Tisdall || ||12:10 - 1:10 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg| (Suggestions for where to eat)]]||-- ||-- || ||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||Louis Vinke || |
||11:30 - 12:10 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_MRI_Basics.pdf|A Non-physicist's Intro to MR]] [[http://www.heartvista.com/SpinBench|SpinBench]]'' '' ||talk ||Dylan Tisdall || ||12:10 - 1:10 ||'''Lunch''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/lunch_map.jpg|(Suggestions for where to eat)]] ||-- ||-- || ||1:10 - 1:30 ||Freeview demonstration ||[[FreeviewGuide|demo]] ||RA || |
Line 19: | Line 17: |
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting|&do=get]] ||talk || Bruce Fischl || | ||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.failure_modes.ppt|FreeSurfer Troubleshooting]] ||talk ||RA || |
Line 21: | Line 19: |
||3:20 - 4:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt | Quality Checking a Recon]] ||demo ||Allison Stevens || ||4:00 - 5:00 || [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff || |
||3:20 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/QArecon.ppt|Quality Checking a Recon]] ||demo ||RA || ||4:00 - 5:00 ||[[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff || |
Line 24: | Line 22: |
Line 27: | Line 26: |
'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm). |
'''Boston Beer Works location information [[http://www.beerworks.net/html/locations_canal.html|here]] and [[http://maps.google.com/maps?f=q&source=s_q&hl=en&geocode=&q=112+Canal+Street+Boston,+MA+02114&aq=&sll=37.0625,-95.677068&sspn=44.25371,54.228516&ie=UTF8&hq=&hnear=112+Canal+St,+Boston,+Massachusetts+02114&ll=42.367359,-71.058776&spn=0.010131,0.013239&z=16|here]].'''<<BR>> Meet us in front of [[http://surfer.nmr.mgh.harvard.edu/fswiki/CourseDescription#Map|Building 149]] to catch the 6:15pm shuttle bus (it leaves on time!). <<BR>> If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm). |
Line 34: | Line 30: |
||8:30 - 9:00||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe || ||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration|&do=get]] ||talk ||Doug Greve || ||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk || Ender Konukoglu || |
||8:30 - 9:00 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]] ||talk ||Andre van der Kouwe || ||9:00 - 9:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Analysis: Intersubject Smoothing & Registration]] ||talk ||Lilla Zollei|| ||9:40 - 10:20 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.groupanalysis.pdf|Group Analysis]] ||talk ||Anastasia Yendiki || |
Line 39: | Line 35: |
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk || Ender Konukoglu || ||11:40 - 12:00 ||QDEC demonstration ||demo || Doug Greve || |
||11:20 - 11:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/freesurfer.multipecomparisons.ppt|Multiple Comparisons]] ||talk ||Anastasia Yendiki || ||11:40 - 12:00 ||QDEC demonstration ||demo ||? || |
Line 44: | Line 40: |
||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Martin Reuter|| | ||2:00 - 2:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.roi.ppt|ROI Analysis]] ||talk ||? || |
Line 46: | Line 42: |
||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || ||3:20 - 3:50|| [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || |
||2:50 - 3:20 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || ||3:20 - 3:50 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] see also:'' LongitudinalProcessing '' ||talk ||Martin Reuter || |
Line 49: | Line 45: |
||4:30 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI|&do=get]] ||talk ||Anastasia Yendiki || ||5:05 - 6:05 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis|&do=get]] ||talk || Jon Polimeni || |
||4:30 - 5:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Introduction to Diffusion MRI]] ||talk ||Anastasia Yendiki || ||5:05 - 6:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fMRI_intro.ppt|Basics of fMRI Analysis]] ||talk ||Jon Polimeni || |
Line 52: | Line 48: |
|
|
Line 58: | Line 52: |
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||8:00 - 8:30 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] ||talk ||Lilla Zollei || ||8:30 - 9:00 ||'''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging]] ||talk ||Dylan Tisdall || ||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve || ||9:45 - 10:00 ||'''break''' || || ||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST]] ||talk ||Doug Greve || ||10:40 - 11:40 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff || ||11:40 - 12:40 ||'''Lunch''' ||-- ||-- || ||12:40 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Lilla Zollei || ||1:40 - 2:55 ||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff || ||2:55 - 3:15 ||'''break''' & Evaluation || || ||3:15 - 4:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||4:05 - 4:50 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||4:50 - 5:20 ||Future Directions ||talk ||TBD || ||5:20 - 5:50 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff || |
|
Line 60: | Line 69: |
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||8:00 - 8:30 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei || ||8:30 - 9:00 || '''optional technical talk -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/FreeSurfer_Course_Apr_2013_Motion_Correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Dylan Tisdall || ||9:00 - 9:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || ||9:45 - 10:00 ||'''break''' || || ||10:00 - 10:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.ppt|FSFAST|&do=get]] ||talk ||Doug Greve || ||10:40 - 11:40 ||[[FsFastTutorialV5.1_freeview|FSFAST Tutorial]] ||tutorial ||staff || ||11:40 - 12:40 ||'''Lunch''' ||-- ||-- || ||12:40 - 1:40 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonMay2014/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Lilla Zollei || ||1:40 - 2:55||[[FsTutorial/MultiModal_freeview|Multi-Modal Integration Tutorial]] ||tutorial ||staff || ||2:55 - 3:15 ||'''break''' & Evaluation|| || ||3:15 - 4:05 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/BostonOct2014/tracula,fs,10.29.14.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || ||4:05 - 4:50 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff || ||4:50 - 5:20 ||Future Directions ||talk || TBD || ||5:20 - 5:50 ||Question and Answer Session (Answers to online questions [[http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/QuestionAnswers|here]]), FsQuiz ||talk ||staff || |
FreeSurfer Course, May 5-7, 2014
8:00 - 9:30am Registration Desk Open
Monday, May 5th - Introduction / Single Subject Analysis /Troubleshooting
Time |
Title |
Type |
Lecturer |
8:30 - 9:00 |
optional - Unix Tutorial for FreeSurfer Users |
tutorial |
RA |
9:00 - 9:15 |
optional - Intro to FreeSurfer Jargon |
talk |
RA |
9:15 - 9:30 |
break |
|
|
9:30 - 10:00 |
talk |
? |
|
10:00 - 11:10 |
talk |
? |
|
11:10 - 11:30 |
break |
|
|
11:30 - 12:10 |
optional - A Non-physicist's Intro to MR SpinBench |
talk |
Dylan Tisdall |
12:10 - 1:10 |
-- |
-- |
|
1:10 - 1:30 |
Freeview demonstration |
RA |
|
1:30 - 2:30 |
tutorial |
||
2:30 - 3:00 |
talk |
RA |
|
3:00 - 3:20 |
break |
|
|
3:20 - 4:00 |
demo |
RA |
|
4:00 - 5:00 |
tutorial |
staff |
|
5:00 - 5:15 |
Question and Answer Session (Answers to online questions here) |
talk |
staff |
Boston Beer Works location information here and here.
Meet us in front of Building 149 to catch the 6:15pm shuttle bus (it leaves on time!).
If you miss us, we are taking the MGH/Navy Yard shuttle to North Station. From there, cross the street to get to Canal Street. Boston Beer Works will be down that street, on your right. (If you miss the 6:15 bus, the next few buses depart at 6:30pm, 6:45pm, 7pm, 7:15pm, and 7:45pm).
Tuesday, May 6th - Group Analysis / ROI Analysis / Longitudinal
Time |
Title |
Type |
Lecturer |
8:30 - 9:00 |
optional technical talk - MRI Acquisition Methods for Morphometry |
talk |
Andre van der Kouwe |
9:00 - 9:40 |
Surface-based Analysis: Intersubject Smoothing & Registration |
talk |
Lilla Zollei |
9:40 - 10:20 |
talk |
Anastasia Yendiki |
|
10:20 - 10:40 |
break |
|
|
10:40 - 11:20 |
tutorial |
staff |
|
11:20 - 11:40 |
talk |
Anastasia Yendiki |
|
11:40 - 12:00 |
QDEC demonstration |
demo |
? |
12:00 - 1:00 |
Lunch |
-- |
-- |
1:00 - 1:20 |
tutorial |
staff |
|
1:20 - 2:00 |
tutorial |
staff |
|
2:00 - 2:30 |
talk |
? |
|
2:30 - 2:50 |
break |
|
|
2:50 - 3:20 |
tutorial |
staff |
|
3:20 - 3:50 |
talk |
Martin Reuter |
|
3:50 - 4:30 |
tutorial |
staff |
|
4:30 - 5:05 |
talk |
Anastasia Yendiki |
|
5:05 - 6:05 |
talk |
Jon Polimeni |
|
6:05 - 6:20 |
Question and Answer Session (Answers to online questions here) |
talk |
staff |
Wednesday, May 7th - fMRI / Multimodal / Future Directions / Q&A
Time |
Title |
Type |
Lecturer |
8:00 - 8:30 |
optional technical talk - Registration Methods |
talk |
Lilla Zollei |
8:30 - 9:00 |
optional technical talk - Motion-compensated neuroanatomical imaging |
talk |
Dylan Tisdall |
9:00 - 9:45 |
talk |
Doug Greve |
|
9:45 - 10:00 |
break |
|
|
10:00 - 10:40 |
talk |
Doug Greve |
|
10:40 - 11:40 |
tutorial |
staff |
|
11:40 - 12:40 |
Lunch |
-- |
-- |
12:40 - 1:40 |
talk |
Lilla Zollei |
|
1:40 - 2:55 |
tutorial |
staff |
|
2:55 - 3:15 |
break & Evaluation |
|
|
3:15 - 4:05 |
talk |
Anastasia Yendiki |
|
4:05 - 4:50 |
tutorial |
staff |
|
4:50 - 5:20 |
Future Directions |
talk |
TBD |
5:20 - 5:50 |
Question and Answer Session (Answers to online questions here), FsQuiz |
talk |
staff |