###acl AdminGroup:read,write,delete,revert PedroOliveira:read,write,delete,revert All:

== FreeSurfer Tutorial and Workshop in São Paulo, Brazil ==
=== 16, 17, & 18 (Sat.,Sun.,Mon.) April 2011 ===

The !FreeSurfer Development Team is hosting a three-day course for beginner and experienced users of !FreeSurfer. Topics are listed below. There are 40 available spots for this course ([[http://www.neuroimagem.com/|see course registration]]). 

Computers will be provided to all pairs of registrants, which will have !FreeSurfer and data already installed. Attendees will work in pairs (sharing a computer). 

The course will be held at São Paulo healthcare complex of HCFMUSP.

Contact: Pedro Paulo de M. Oliveira Jr. ( ppj at netfilter dot com dot br )

=== Location ===

[[http://www.hcnet.usp.br/|Hospital das Clínicas]] - [[http://maps.google.com/maps?q=Avenida%20Dr%20Eneas%20de%20Carvalho%20Aguiar%2C%2044%20-%20S%C3%A3o%20Paulo%20-%20SP%20-%20Brazil&oe=utf-8&rls=org.mozilla:en-US:official&client=firefox-a&um=1&ie=UTF-8&sa=N&hl=en&tab=wl|Avenida Dr Eneas de Carvalho Aguiar, 44 - São Paulo - SP - Brazil]] -  ([[http://www.atlanticahotels.com.br/atlantica/hoteis/estrutura.asp?Numfuncionalidade=292&NumHotel=34&Cidade=S%E3o%20Paulo&titulo=Apresenta%E7%E3o|hotel]],[[http://maps.google.com/maps?hl=en&q=rua%20Oscar%20Freire%2C%201948%20-%20Jardim%20Paulista%2C%20S%C3%A3o%20Paulo%20-%20SP%2C%2005409000%2C%20Brazil&um=1&ie=UTF-8&sa=N&tab=wl|map]])

The course will be held at the [[http://upload.wikimedia.org/wikipedia/commons/7/72/Hospitaldocancerdesp2.jpg|Radiology Center Building]], in the Amphitheatre C.

=== Saturday, 16 April - Introduction / Single Subject / Troubleshooting ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||8:30 - 9:00 ||'''Course Registration''' ||sign-in || [[attachment:brazil2009.jpg|staff]] ||
||9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial || Pedro Paulo de M. Oliveira Jr.||
||9:30 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsjargon.ppt|Intro to FreeSurfer Jargon|&do=get]] ||talk ||Pedro Paulo de M. Oliveira Jr. ||
||10:00 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]] ||talk || Nick Schmansky ||
||10:30 - 11:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]], [[Publications]] ||talk || Nick Schmansky ||
||11:00 - 11:30 ||'''break''' || || ||
||11:30 - 12:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.AS.ppt|Analyzing the Individual Subject]] ||talk || Allison Stevens ||
||12:30 - 1:30 ||'''lunch''' ||-- ||-- ||
||1:30 - 2:00 ||Tkmedit/Tksurfer demonstration ||demo || Nick Schmansky ||
||2:00 - 3:00 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff ||
||3:00 - 3:30 ||'''break''' || || ||
||3:30- 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.AS.ppt|Failure Modes|&do=get]] ||talk || Allison Stevens ||
||4:00 - 4:30 ||Quality Checking a Recon ||demo ||Allison Stevens ||
||4:30 - 5:30 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison ||
##||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one || staff ||
##||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data]] ||one-on-one || staff ||

=== Sunday, 17 April - Group Analysis / Registration / Longitudinal / ROIs ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 10:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] ||talk || Lilla Zollei ||
||10:00 - 10:30 ||QDEC demonstration ||demo ||Nick Schmansky ||
||10:30 - 10:45 ||'''break''' || || ||
||10:45 - 11:15 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff ||
||11:15 - 11:45 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff ||
||11:45 - 1:00 ||'''lunch''' ||-- ||-- ||
||1:00 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]]|| talk || Lilla Zollei ||
||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk || Lilla Zollei ||
||2:45 - 3:00 ||'''break''' || || ||
||3:00 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.AS.ppt|ROI Analysis|&do=get]] ||talk || Allison Stevens ||
||3:30 - 4:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] [[http://www.heartvista.com/SpinBench|SpinBench]] ||talk || Andre van der Kouwe||
||4:00 - 4:30 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff ||
||4:30 - 5:00 ||[[FsTutorial/LongitudinalTutorial|Longitudinal Tutorial]] ||tutorial ||staff ||

=== Monday, 18 April - Diffusion / Tracula / MRI basics / Apps / Q&A ===
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' ||
||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/dmri,fs.ppt|Diffusion Data Processing|&do=get]],[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|dtrecon intro|&do=get]] ||talk ||Lilla Zollei ||
||9:30 - 10:30 ||[[FsTutorial/Diffusion|Diffusion Processing Tutorial]] ||tutorial ||staff ||
||10:30 - 11:00 ||'''break and [[attachment:IMG_4834.JPG|group photo]]''' || || ||
||11:00 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Lilla Zollei||
||11:30 - 12:30 ||[[FsTutorial/Tracula|Tracula Tutorial]] ||tutorial ||staff ||
||12:30 - 1:30 ||'''lunch''' ||-- ||-- ||
||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] ||talk ||Andre van der Kouwe||
||2:00 - 2:30 ||'''break and [[ https://spreadsheets.google.com/viewform?formkey=dGpBYmJld1hhbXlkRjg0ZHIxblJCeWc6MA|evaluations]]''' || || ||
||2:30 - 3:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]] ||talk ||Andre van der Kouwe||
||3:00 - 3:30 ||[[http://itunes.apple.com/us/app/isurf-brainview/id381072423?mt=8|iSurf]] and [[attachment:LocalApplicationsFSCourse.ppt|local FreeSurfer Applications]] ||talk ||Pedro Paulo de M. Oliveira Jr. ||
||3:30 - 4:00 ||Question and Answer Session, FsQuiz ||talk ||staff ||