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||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||8:00 - 8:30 ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] ||tutorial ||Allison Stevens || ||8:30 - 9:00 ||'''optional -''' Intro to !FreeSurfer Jargon ||talk ||Allison Stevens || ||8:30 - 9:00 ||'''Course Registration''' ||sign-in ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff]] || ||9:00 - 9:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer]] ||talk ||Bruce Fischl || ||9:30 - 10:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject]] ||talk ||Doug Greve || ||10:30 - 10:45 ||'''break''' || || || ||10:45 - 11:15 ||Tkmedit/Tksurfer demonstration ||demo ||Doug Greve || ||11:15 - 11:45 ||[[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] ||tutorial ||staff || ||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk ||Bruce Fischl || ||12:15 - 1:15 ||'''Lunch''' ||-- ||-- || ||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|Intro to MR]] '' ||''talk'' ||''Dylan Tisdall'' || ||1:15 - 2:15 ||Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]] ||tutorial ||staff, Allison || ||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration]] ||talk ||Doug Greve || ||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications]] ||talk || David Salat || ||3:15 - 3:30 ||'''break''' || || || ||3:30 - 4:15 || Registration || talk || Lilla Zollei || ||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || ||4:45 - 5:30 ||Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list; <<BR>>*anything that needs to be done to finish use case ||tutorial ||staff || ||5:30 - ||'''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] ||one-on-one ||Nick Schmansky || ||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data]] ||one-on-one ||Allison Stevens || |
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|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' || || 8:00 - 8:30 || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/unix_tutorial_FS_course.ppt|Unix Tutorial for FreeSurfer Users|&do=get]] [[http://www.ee.surrey.ac.uk/Teaching/Unix|1. Surrey]], [[http://docstore.mik.ua/orelly/linux/lnut/index.htm|2. O'Reilly]] || tutorial || Allison Stevens || || 8:30 - 9:00 || '''optional -''' Intro to !FreeSurfer Jargon || talk || Allison Stevens || || 8:30 - 9:00 || '''Course Registration''' || sign-in || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/boston_fs_course_jan2009.jpg|staff|&do=get]] || || 9:00 - 9:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.intro.ppt|Introduction to Freesurfer|&do=get]]|| talk || Bruce Fischl || || 9:30 - 10:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsrecon.ppt|Analyzing the Individual Subject|&do=get]] || talk|| Doug Greve || || 10:30 - 10:45 || '''break''' || || || || 10:45 - 11:15 || Tkmedit/Tksurfer demonstration || demo || Doug Greve || || 11:15 - 11:45 || [[FsTutorial/OutputData|Interaction with Individual Subject Data Tutorial]] || tutorial || staff || || 11:45 - 12:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] || talk || Doug Greve || || 12:15 - 1:15 || '''Lunch''' || -- || -- || || ''12:30 - 1:00'' || ''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.ppt|FreeSurfer Applications|&do=get]]'' || ''talk'' || ''David Salat''|| || 1:15 - 1:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|Intro to MR|&do=get]] || talk || Dylan Tisdall || || 1:45 - 2:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]] || talk || Andre van der Kouwe || || 2:30 - 2:45 || '''break''' || || || || 2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing|| talk || Martin Reuter || || 3:15 - 4:00 || Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list; <<BR>>*anything that needs to be done to finish use case || tutorial || staff || || 4:00 - 4:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] || talk || Bruce Fischl|| || 4:30 - 5:30 || Troubleshooting Demonstration, [[FsTutorial/TroubleshootingData|Troubleshooting Tutorial]]|| tutorial || staff, Allison || || 5:30 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky || || 5:30 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens || |
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|| '''Time''' || '''Title''' || '''Type''' || '''Lecturer''' || || 8:15 - 9:00 || Quality Checking a Recon || demo || Allison Stevens || || 9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons|&do=get]] || talk || Mert Sabuncu || || 10:00 - 11:00 || [[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] || tutorial || staff || || 11:00 - 11:15 || '''break''' || || || || 11:15 - 11:45 || QDEC demonstration || demo || Nick Schmansky || || 11:45 - 12:30 || [[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] || tutorial || staff || || 12:30 - 1:30 || '''Lunch''' || -- || -- || || ''12:45 - 1:15'' || ''Optional Lunch Talk''- ''Which What to Register'' || ''talk'' || ''Lilla Zollei''|| || 1:30 - 2:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] || talk || Doug Greve || || 2:30 - 3:00 || [[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] || tutorial || staff || || 3:00 - 3:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/CVS-lzollei.ppt|Combined Volume and Surface Registration|&do=get]] || talk || Lilla Zollei || || 3:30 - 3:45 || '''break''' || || || || 3:45 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing|&do=get]] || talk || Lilla Zollei || || 4:15 - 5:15 || Diffusion Tutorial || tutorial || staff || || 5:15 - 5:35 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] || talk || Anastasia Yendiki || || 5:35 - || '''optional -''' [[DownloadAndInstall|FreeSurfer Installation on Personal Laptops]] || one-on-one || Nick Schmansky || || 5:35 - || '''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]]|| one-on-one || Allison Stevens || |
||'''Time''' ||'''Title''' ||'''Type''' ||'''Lecturer''' || ||8:15 - 9:00 ||Quality Checking a Recon ||demo ||Allison Stevens || ||9:00 - 11:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Introduction to Diffusion Processing]] ||talk ||Lilla Zollei || ||11:00 - 11:15 ||'''break''' || || || ||11:15 - 11:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || ||11:45 - 12:45 ||Diffusion Tutorial ||tutorial ||staff || ||12:45 - 1:45 ||'''Lunch''' ||-- ||-- || ||''1:15 - 1:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' || ||1:45 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve || ||2:45 - 3:15 ||[[FsTutorial/AnatomicalROI|ROI Analysis Tutorial]] ||tutorial ||staff || ||3:15 - 3:30 ||'''break''' || || || ||3:30 - 4:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.groupanalysis.ppt|Group Analysis / GLM / Multiple Comparisons]] ||talk ||Mert Sabuncu || ||4:30 - 5:00 ||QDEC demonstration ||demo ||Nick Schmansky || ||5:00 - 6:00 ||[[FsTutorial/GroupAnalysis|Group Analysis / Multiple Comparisons - mri_glmfit Tutorial]] ||tutorial ||staff || ||5:00 - 6:00 ||[[FsTutorial/QdecGroupAnalysis|Group Analysis - qdec Tutorial]] ||tutorial ||staff || |
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|| 8:30 - 9:45 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] || talk || Doug Greve || || 9:45 - 10:45 || [[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] || tutorial || staff || || 10:45 - 11:00 || '''break''' || || || || 11:00 - 11:30 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] || talk || David Salat || || 11:30 - 12:30 || '''Lunch''' || -- || -- || || 12:10 - 12:30 || ''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' || ''talk'' || ''Dylan Tisdall'' || || 12:30 - 12:50 || Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI|&do=get]] || talk || Bruce Fischl || || 12:50 - 2:15 || FSFAST || talk || Doug Greve || || 2:15 - 2:30 || '''break''' || || || || 2:30 - 3:30 || FSFAST || talk || Doug Greve || || 3:30 - 4:30 || FSFAST || tutorial || staff || || 4:30 - 5:15 || Question and Answer Session, FsQuiz || talk || staff || |
||8:30 - 9:45 ||FSFAST ||talk ||Doug Greve || ||9:45 - 10:00 ||'''break''' || || || ||10:00 - 11:00 ||FSFAST ||talk ||Doug Greve || ||11:00 - 12:00 ||FSFAST ||tutorial ||staff || ||12:00 - 1:00 ||'''Lunch''' ||-- ||-- || ||''12:40 - 1:00'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tisdall_moco.pdf|Motion-compensated neuroanatomical imaging]]'' ||''talk'' ||''Dylan Tisdall'' || ||1:00 - 1:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation]] ||talk ||David Salat || ||1:30 - 1:50 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl || ||1:50 - 2:15 ||'''break''' Evaluation || || || ||2:15 - 3:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Doug Greve || ||3:30 - 4:30 ||[[FsTutorial/MultiModal|Multi-Modal Integration Tutorial]] ||tutorial ||staff || ||4:30 - 5:00 ||Question and Answer Session, FsQuiz ||talk ||staff || |
FreeSurfer Course, April 4 and 5, 2010
MGH, Charlestown Navy Yard, Building 149, Conference Room A
Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting
Time |
Title |
Type |
Lecturer |
8:00 - 8:30 |
optional - Unix Tutorial for FreeSurfer Users 1. Surrey, 2. O'Reilly |
tutorial |
Allison Stevens |
8:30 - 9:00 |
optional - Intro to FreeSurfer Jargon |
talk |
Allison Stevens |
8:30 - 9:00 |
Course Registration |
sign-in |
|
9:00 - 9:30 |
talk |
Bruce Fischl |
|
9:30 - 10:30 |
talk |
Doug Greve |
|
10:30 - 10:45 |
break |
|
|
10:45 - 11:15 |
Tkmedit/Tksurfer demonstration |
demo |
Doug Greve |
11:15 - 11:45 |
tutorial |
staff |
|
11:45- 12:15 |
talk |
Bruce Fischl |
|
12:15 - 1:15 |
Lunch |
-- |
-- |
12:45 - 1:15 |
Optional Lunch Talk- Intro to MR |
talk |
Dylan Tisdall |
1:15 - 2:15 |
Troubleshooting Demonstration, Troubleshooting Tutorial |
tutorial |
staff, Allison |
2:15 - 2:45 |
talk |
Doug Greve |
|
2:45 - 3:15 |
talk |
David Salat |
|
3:15 - 3:30 |
break |
|
|
3:30 - 4:15 |
Registration |
talk |
Lilla Zollei |
4:15 - 4:45 |
talk |
Martin Reuter |
|
4:45 - 5:30 |
Longitudinal tutorial; checking recon-all.log of failed subject; how to report bugs/ask questions on list; |
tutorial |
staff |
5:30 - |
optional - FreeSurfer Installation on Personal Laptops |
one-on-one |
Nick Schmansky |
5:30 - |
optional - Start Processing Your Own Data |
one-on-one |
Allison Stevens |
Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion
Time |
Title |
Type |
Lecturer |
8:15 - 9:00 |
Quality Checking a Recon |
demo |
Allison Stevens |
9:00 - 11:00 |
talk |
Lilla Zollei |
|
11:00 - 11:15 |
break |
|
|
11:15 - 11:45 |
talk |
Anastasia Yendiki |
|
11:45 - 12:45 |
Diffusion Tutorial |
tutorial |
staff |
12:45 - 1:45 |
Lunch |
-- |
-- |
1:15 - 1:45 |
Optional Lunch Talk- MRI Acquisition Methods for Morphometry |
talk |
Andre van der Kouwe |
1:45 - 2:45 |
talk |
Doug Greve |
|
2:45 - 3:15 |
tutorial |
staff |
|
3:15 - 3:30 |
break |
|
|
3:30 - 4:30 |
talk |
Mert Sabuncu |
|
4:30 - 5:00 |
QDEC demonstration |
demo |
Nick Schmansky |
5:00 - 6:00 |
tutorial |
staff |
|
5:00 - 6:00 |
tutorial |
staff |
Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A
8:30 - 9:45 |
FSFAST |
talk |
Doug Greve |
9:45 - 10:00 |
break |
|
|
10:00 - 11:00 |
FSFAST |
talk |
Doug Greve |
11:00 - 12:00 |
FSFAST |
tutorial |
staff |
12:00 - 1:00 |
Lunch |
-- |
-- |
12:40 - 1:00 |
Optional Lunch Talk- Motion-compensated neuroanatomical imaging |
talk |
Dylan Tisdall |
1:00 - 1:30 |
talk |
David Salat |
|
1:30 - 1:50 |
Future Directions: Inferring architectonic boundaries from in-vivo MRI |
talk |
Bruce Fischl |
1:50 - 2:15 |
break Evaluation |
|
|
2:15 - 3:30 |
talk |
Doug Greve |
|
3:30 - 4:30 |
tutorial |
staff |
|
4:30 - 5:00 |
Question and Answer Session, FsQuiz |
talk |
staff |