Deletions are marked like this. | Additions are marked like this. |
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||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes]] ||talk ||Bruce Fischl || | ||11:45- 12:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.failure_modes.ppt|Failure Modes|&do=get]] ||talk ||Bruce Fischl || |
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||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR]] '' ||''talk'' ||''Dylan Tisdall'' || | ||''12:45 - 1:15'' ||''Optional Lunch Talk''- '' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_basics.pdf|A Non-physicist's Intro to MR|&do=get]] '' ||''talk'' ||''Dylan Tisdall'' || |
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||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration]] ||talk ||Doug Greve || ||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2011.ppt|FreeSurfer Applications]] ||talk || David Salat || |
||2:15 - 2:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.surface-based-analysis.ppt|Surface-based Smoothing/Surface-based Registration|&do=get]] ||talk ||Doug Greve || ||2:45 - 3:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.applications.2011.ppt|FreeSurfer Applications|&do=get]] ||talk || David Salat || |
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||3:30 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods]] || talk || Lilla Zollei || ||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || |
||3:30 - 4:15 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.registration.ppt|Registration Methods|&do=get]] || talk || Lilla Zollei || ||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.longitudinal.ppt|Longitudinal FreeSurfer|&do=get]] ''see also:'' LongitudinalProcessing ||talk ||Martin Reuter || |
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||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data]] ||one-on-one || staff || | ||5:30 - ||'''optional -''' [[http://surfer.nmr.mgh.harvard.edu/pub/docs/runningyourdata.ppt|Start Processing Your Own Data|&do=get]] ||one-on-one || staff || |
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||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry]]'' ||''talk'' ||''Andre van der Kouwe'' || ||12:45 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis]] ||talk ||Doug Greve || |
||''12:15 - 12:45'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/mri_acquisition.ppt|MRI Acquisition Methods for Morphometry|&do=get]]'' ||''talk'' ||''Andre van der Kouwe'' || ||12:45 - 1:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.roi.ppt|ROI Analysis|&do=get]] ||talk ||Doug Greve || |
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||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing]] ||talk ||Anastasia Yendiki || | ||2:15 - 3:15 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.dt_recon-intro.ppt|Diffusion Data Processing|&do=get]] ||talk ||Anastasia Yendiki || |
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||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)]] ||talk ||Anastasia Yendiki || | ||4:15 - 4:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/tracula,fs.ppt|TRActs Constrained by UnderLying Anatomy (TRACULA)|&do=get]] ||talk ||Anastasia Yendiki || |
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||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis]] ||talk ||Doug Greve || | ||9:00 - 10:00 || [[http://surfer.nmr.mgh.harvard.edu/pub/docs/fmri.april2011.pdf|Basics of fMRI Analysis|&do=get]] ||talk ||Doug Greve || |
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||10:15 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.pdf|FSFAST]] ||talk ||Doug Greve || | ||10:15 - 11:30 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fsfast.april2011.pdf|FSFAST|&do=get]] ||talk ||Doug Greve || |
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||''1:00 - 1:30'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging]]'' ||''talk'' ||''Dylan Tisdall'' || ||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation]] ||talk ||David Salat || ||2:00 - 2:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl || |
||''1:00 - 1:30'' ||''Optional Lunch Talk''- ''[[http://surfer.nmr.mgh.harvard.edu/pub/docs/motion_correction.pdf|Motion-compensated neuroanatomical imaging|&do=get]]'' ||''talk'' ||''Dylan Tisdall'' || ||1:30 - 2:00 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.reliability.ppt|Accuracy, Reliability and Validation|&do=get]] ||talk ||David Salat || ||2:00 - 2:20 ||Future Directions: [[http://surfer.nmr.mgh.harvard.edu/pub/docs/freesurfer.inferring_architectonics.ppt|&do=get|Inferring architectonic boundaries from in-vivo MRI]] ||talk ||Bruce Fischl || |
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||2:45 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration]] ||talk ||Doug Greve || | ||2:45 - 3:45 ||[[http://surfer.nmr.mgh.harvard.edu/pub/docs/fs.multimodal-integration.ppt|Multi-Modal Integration|&do=get]] ||talk ||Doug Greve || |
FreeSurfer Course, April 4 - 6, 2011
MGH, Charlestown Navy Yard, Building 149, Conference Room A
Monday, April 4th - Introduction / Single Subject / MRI / Longitudinal/ Troubleshooting
Time |
Title |
Type |
Lecturer |
8:00 - 8:30 |
optional - Unix Tutorial for FreeSurfer Users online practice |
tutorial |
Allison Stevens |
8:30 - 9:00 |
optional - Intro to FreeSurfer Jargon |
talk |
Allison Stevens |
8:30 - 9:00 |
Course Registration |
sign-in |
|
9:00 - 9:30 |
talk |
Bruce Fischl |
|
9:30 - 10:30 |
talk |
Doug Greve |
|
10:30 - 10:45 |
break |
|
|
10:45 - 11:15 |
Tkmedit/Tksurfer demonstration |
demo |
Doug Greve |
11:15 - 11:45 |
tutorial |
staff |
|
11:45- 12:15 |
talk |
Bruce Fischl |
|
12:15 - 1:15 |
Lunch (Suggestions) |
-- |
-- |
12:45 - 1:15 |
Optional Lunch Talk- A Non-physicist's Intro to MR |
talk |
Dylan Tisdall |
1:15 - 2:15 |
Troubleshooting Demonstration, Troubleshooting Tutorial |
tutorial |
staff, Allison |
2:15 - 2:45 |
talk |
Doug Greve |
|
2:45 - 3:15 |
talk |
David Salat |
|
3:15 - 3:30 |
break |
|
|
3:30 - 4:15 |
talk |
Lilla Zollei |
|
4:15 - 4:45 |
talk |
Martin Reuter |
|
4:45 - 5:30 |
tutorial |
staff |
|
5:30 - |
optional - FreeSurfer Installation on Personal Laptops |
one-on-one |
staff |
5:30 - |
optional - Start Processing Your Own Data |
one-on-one |
staff |
Boston Beer Works location information here and here.
Meet us at 6:25pm at the front of Building 149 (the entrance on the opposite side of the building from where the Course is held).
If you miss us, we are taking the 6:30pm MGH/Navy Yard shuttle to North Station (the next one departs at 6:45pm). From there, you cross the street and go down Canal Street. Boston Beer Works will be on your right.
Tuesday, April 5th - Group Analysis/ ROIs / Registration / Diffusion
Time |
Title |
Type |
Lecturer |
9:00 - 10:00 |
talk |
Mert Sabuncu |
|
10:00 - 10:30 |
QDEC demonstration |
demo |
Nick Schmansky |
10:30 - 10:45 |
break |
|
|
10:45 - 11:45 |
tutorial |
staff |
|
10:45 - 11:45 |
tutorial |
staff |
|
11:45 - 12:45 |
Lunch |
-- |
-- |
12:15 - 12:45 |
Optional Lunch Talk- MRI Acquisition Methods for Morphometry |
talk |
Andre van der Kouwe |
12:45 - 1:45 |
talk |
Doug Greve |
|
1:45 - 2:15 |
tutorial |
staff |
|
2:15 - 3:15 |
talk |
Anastasia Yendiki |
|
3:15 - 3:30 |
break |
|
|
3:30 - 4:15 |
tutorial |
staff |
|
4:15 - 4:45 |
talk |
Anastasia Yendiki |
|
4:45 - 5:30 |
tutorial |
staff |
|
5:30 - 6:00 |
optional - Quality Checking a Recon |
demo |
Allison Stevens |
Wednesday, April 6th - Multi-Modal / Future Directions / fMRI / Q&A
9:00 - 10:00 |
talk |
Doug Greve |
|
10:00 - 10:15 |
break |
|
|
10:15 - 11:30 |
talk |
Doug Greve |
|
11:30 - 12:30 |
tutorial |
staff |
|
12:30 - 1:30 |
Lunch |
-- |
-- |
1:00 - 1:30 |
Optional Lunch Talk- Motion-compensated neuroanatomical imaging |
talk |
Dylan Tisdall |
1:30 - 2:00 |
talk |
David Salat |
|
2:00 - 2:20 |
Future Directions: &do=get |
talk |
Bruce Fischl |
2:20 - 2:45 |
break & Evaluation |
|
|
2:45 - 3:45 |
talk |
Doug Greve |
|
3:45 - 4:30 |
tutorial |
staff |
|
4:30 - 5:00 |
Question and Answer Session, FsQuiz |
talk |
staff |