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AnatomiCuts correspondences
This method finds corresponding clusters across subjects. Currently, only one-to-one cluster's correspondences are available using the Hungarian algorithm.
The Hungarian algorithm
The Hungarian algorithm finds corresponding clusters between two subjects.
AnatomiCuts_correspondences -s1 segmentation1.nii.gz -s2 segmentation2.nii.gz -c numClusters -h1 clusteringPath1 -h2 clusteringPath2 -m metric -o output.csv
Where
-s1 the segmentation to be used for anatomical similarity in subject one.
-s2 the segmentation to be used for anatomical similarity in subject one.
-h1 the path to the AnatomiCuts folder to be used for subject1.
-h2 the path to the AnatomiCuts folder to be used for subject2.
-m metric to be used: labels (anatomical similarity) or euclid (euclidean similarity).
-sym (under development) this flag will mirror the segmentation in subject 2 to find between hemisphere correspondences.
-o output csv file